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TRANSIT MANUAL

  • TRANSIT Overview
  • Installation
  • Running TRANSIT
  • Quality Control

ANALYSIS METHODS

  • Gumbel
  • Griffin
  • Tn5Gaps
  • HMM
  • Resampling
  • Mann-Whitney U-test (utest)
  • Genetic Interactions
  • ANOVA
  • ZINB
  • Normalization
  • Pathway Enrichment Analysis
  • corrplot
  • heatmap
  • TTN-Fitness

TRANSIT Tutorials

  • Tutorial: Genetic Interactions Analysis
  • Tutorial: Normalize datasets
  • Tutorial: Export datasets
  • Console Mode Cheat-Sheet

TPP Manual

  • TPP Overview
  • Installation
  • Running TPP
  • Mapping to Genomes with Multiple Contigs
  • Overview of Data Processing Procedure
  • Statistics

Code Documentation

  • transit package
TRANSIT
  • Docs »
  • Overview: module code

All modules for which code is available

  • functools
  • pytransit.norm_tools
  • pytransit.stat_tools
  • pytransit.tnseq_tools
  • pytransit.transit_tools

© Copyright 2015, Michael A. DeJesus & Thomas R. Ioerger Revision 77eaa839.

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