TRANSIT
TRANSIT MANUAL
TRANSIT Overview
Installation
Running TRANSIT
Quality Control
File Formats for Transit
TnSeq ANALYSIS METHODS
Normalization
tnseq_stats
Gumbel
Griffin
TTN-Fitness
Tn5Gaps
HMM
Resampling
Mann-Whitney U-test (utest)
ANOVA
corrplot
heatmap
Genetic Interactions
ZINB
Pathway Enrichment Analysis
TRANSIT Tutorials
Tutorial: Genetic Interactions Analysis
Tutorial: Normalize datasets
Tutorial: Export datasets
Console Mode Cheat-Sheet
TPP Manual
TPP Overview
Installation
Running TPP
Mapping to Genomes with Multiple Contigs
Overview of Data Processing Procedure
Statistics
Code Documentation
pytransit package
Example Scripts (for Developers)
TRANSIT
Python Module Index
Python Module Index
p
p
pytransit