TRANSIT Logo
stable

TRANSIT MANUAL

  • TRANSIT Overview
  • Installation
  • Running TRANSIT
  • Quality Control

ANALYSIS METHODS

  • Gumbel
  • Griffin
  • Tn5Gaps
  • HMM
  • Resampling
  • Mann-Whitney U-test (utest)
  • Genetic Interactions
  • ANOVA
  • ZINB
  • Normalization
  • Pathway Enrichment Analysis
  • corrplot
  • heatmap
  • TTN-Fitness

TRANSIT Tutorials

  • Tutorial: Genetic Interactions Analysis
  • Tutorial: Normalize datasets
  • Tutorial: Export datasets
  • Console Mode Cheat-Sheet

TPP Manual

  • TPP Overview
  • Installation
  • Running TPP
  • Mapping to Genomes with Multiple Contigs
  • Overview of Data Processing Procedure
  • Statistics

Code Documentation

  • transit package
TRANSIT
  • Docs »
  • Python Module Index

Python Module Index

p
 
p
- pytransit
    pytransit.norm_tools
    pytransit.stat_tools
    pytransit.tnseq_tools
    pytransit.transit_tools

© Copyright 2015, Michael A. DeJesus & Thomas R. Ioerger Revision 77eaa839.

Built with Sphinx using a theme provided by Read the Docs.
Read the Docs v: stable
Versions
latest
stable
v3.2.7
v3.2.6
v3.2.5
v3.2.4
v3.2.3
v3.2.2
v3.2.1
v3.2.0
v3.1.0
v3.0.2
v3.0.1
v3.0.0
v2.5.2
v2.5.1
v2.5.0
v2.4.2
v2.4.1
v2.3.3
v2.3.2
v2.3.1
v2.3.0
v2.2.1
v2.0.0
v1.4.3
dev
Downloads
pdf
html
epub
On Read the Docs
Project Home
Builds

Free document hosting provided by Read the Docs.