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v3.3.0

TRANSIT MANUAL

  • TRANSIT Overview
  • Installation
  • Running TRANSIT
  • Quality Control

[** NEW **] CRISRPi ANALYSIS METHODS

  • CRISPRi-DR

TnSeq ANALYSIS METHODS

  • Gumbel
  • Griffin
  • Tn5Gaps
  • HMM
  • Resampling
  • Mann-Whitney U-test (utest)
  • Genetic Interactions
  • ANOVA
  • ZINB
  • Normalization
  • Pathway Enrichment Analysis
  • corrplot
  • heatmap
  • TTN-Fitness

TRANSIT Tutorials

  • Tutorial: Genetic Interactions Analysis
  • Tutorial: Normalize datasets
  • Tutorial: Export datasets
  • Console Mode Cheat-Sheet

TPP Manual

  • TPP Overview
  • Installation
  • Running TPP
  • Mapping to Genomes with Multiple Contigs
  • Overview of Data Processing Procedure
  • Statistics

Code Documentation

  • transit package
TRANSIT
  • Docs »
  • Python Module Index

Python Module Index

p
 
p
- pytransit
    pytransit.norm_tools
    pytransit.stat_tools
    pytransit.tnseq_tools
    pytransit.transit_tools

© Copyright 2015, Michael A. DeJesus & Thomas R. Ioerger Revision 119582a3.

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